Sen. Dianne Feinstein (D-Calif.), who this week begins her tenure as the first female chair of the Senate Intelligence Committee, said today that she was not consulted on the choice and indicated she might oppose it.

"I was not informed about the selection of Leon Panetta to be the CIA director," Feinstein said. "My position has consistently been that I believe the agency is best served by having an intelligence professional in charge at this time." [...]

A senior aide to Sen. John D. Rockefeller IV (D-W.Va.), outgoing chairman of the Senate Intelligence Committee, said that the senator "would have concerns" about a Panetta nomination.

Rockefeller "thinks very highly of Panetta," the aide said. "But he's puzzled by the selection. He has concerns because he has always believed that the director of CIA needs to be someone with significant operational intelligence experience, and someone outside the political realm."

Panetta's selection suggests that Obama intends to shake up the agency, which has had little public accounting of its role in detaining top terror suspects and transferring others to regimes known to use torture, a procedure known as extraordinary rendition.

The CIA, which denies subjecting detainees to torture, is part of a 16-agency intelligence community whose annual budget now exceeds $47.5 billion. The agency keeps its own budget and number of employees secret. Its successes, too, are mostly kept secret while some of its failures reach front pages.

Panetta has suggested that Obama could do much to signal a break with Bush administration policies by signing executive orders during his first 100 days that ban the use of torture in interrogations and close the Guantanamo Bay prison.

"Issuing executive orders on issues such as prohibiting torture or closing Guantanamo Bay would make clear that his administration will do things differently," Panetta wrote Nov. 9 in a regular column he published in his local newspaper, the Monterey (Calif.) County Herald [...]

"He will be an outsider and I think the president wants an outsider's perspective on the CIA," said Lee Hamilton, a former Indiana congressman and a former chairman of the House Permanent Select Committee on Intelligence who heads the Woodrow Wilson Center in Washington. "The intelligence community has lost a lot of confidence with the American people and the Congress. I'm talking about 9/11, the Iraq war."

NBC News has learned that Senate Democrats -- including Dianne Feinstein and Jay Rockefeller, who are the incoming and outgoing Intelligence chairmen -- have privately recommended a career CIA officer to head the agency.

Democratic sources indicate that both have recommended deputy CIA Director Steve Kappes, a veteran CIA intelligence officer who is widely credited with getting the Libyans to give up their nuclear program. Kappes also was former Moscow station chief [...]

One potential downside for Kappes: Like former counter-terror chief John Brennan, some critics says he had line authority over controversial decisions involving interrogation and detention. Brennan was taken out of contention for the CIA job after criticism on the Web on that issue, even though he says he privately objected to the policies and was not in the chain of command at the time.

When Muhammad Saad Iqbal arrived home here in August after more than six years in American custody, including five at the military prison at Guantánamo Bay, Cuba, he had difficulty walking, his left ear was severely infected, and he was dependent on a cocktail of antibiotics and antidepressants.

In November, a Pakistani surgeon operated on his ear, physical therapists were working on lower back problems and a psychiatrist was trying to wean him off the drugs he carried around in a white, plastic shopping bag.

The maladies, said Mr. Iqbal, 31, a professional reader of the Koran, are the result of a gantlet of torture, imprisonment and interrogation for which his Washington lawyer plans to sue the United States government [...]

Mr. Iqbal was never convicted of any crime, or even charged with one. He was quietly released from Guantánamo with a routine explanation that he was no longer considered an enemy combatant, part of an effort by the Bush administration to reduce the prison’s population.

“I feel ashamed what the Americans did to me in this period,” Mr. Iqbal said, speaking for the first time at length about his ordeal during several hours of interviews with The New York Times, including one from his hospital bed in Lahore.

Mr. Iqbal was arrested early in 2002 in Jakarta, Indonesia, after boasting to members of an Islamic group that he knew how to make a shoe bomb, according to two senior American officials who were in Jakarta at the time.

Mr. Iqbal now denies ever having made the statement, but two days after his arrest, he said, the Central Intelligence Agency transferred him to Egypt. He was later shifted to the American prison at Bagram Air Base in Afghanistan, and ultimately to Guantánamo Bay.

Much of Mr. Iqbal’s account could not be independently corroborated. Two senior American officials confirmed that Mr. Iqbal had been “rendered” from Indonesia, but could not comment on, or confirm details of, how he was treated in custody. The Pentagon and C.I.A. deny using torture, and American diplomatic, military and intelligence officials agreed to talk about the case only on the condition of anonymity because the files are classified.